Weeder 2.0 / WeederH 1.0
Weeder is an algorithm for the automatic discovery of conserved motifs in a set of related regulatory DNA sequences.
WeederH is a software for finding of conserved nucleotide motifs and regions through comparative genomics, tailored for the analysis of non-coding DNA and the identification of conserved TFBSs or whole enhancers or silencers.
- Linux / Windows
:: MORE INFORMATION
Pavesi, G., Mereghetti, P., Mauri, G. and Pesole, G. (2004)
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Res., 32, W199-203.
WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Pavesi G, Zambelli F, Pesole G.
BMC Bioinformatics. 2007 Feb 7;8:46.