VarGeno is a method for SNP genotyping from Illumina whole genome sequencing data. VarGeno builds upon LAVA by improving the speed of k-mer querying as well as the accuracy of the genotyping strategy.
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Bioinformatics, 35 (3), 415-420 2019 Feb 1
Toward Fast and Accurate SNP Genotyping From Whole Genome Sequencing Data for Bedside Diagnostics
Chen Sun , Paul Medvedev