ProtOn 1603061903 – Description of Protein 3D structure in terms of Architecture, Topology and Motifs

ProtOn 1603061903

:: DESCRIPTION

ProtOn (Proteins Online): 1) draws β-sheet maps, 2) detects architectures of all-β and α/β-classes and 3) detects structural motifs containing β-strands

::DEVELOPER

Evgeniy Aksianov (evaksianov@gmail.com)

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

  ProtOn

:: MORE INFORMATION

SheeP 1603061903 – Description of β-sheets in Protein 3D structures

SheeP 1603061903

:: DESCRIPTION

SheeP displays schemes of β-sheet called draws β-sheet maps

::DEVELOPER

Evgeniy Aksianov (evaksianov@gmail.com)

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

  SheeP

:: MORE INFORMATION

Citation

J Bioinform Comput Biol. 2012 Apr;10(2):1241003. doi: 10.1142/S021972001241003X.
SheeP: A tool for description of β-sheets in protein 3D structures.
Aksianov E, Alexeevski A.

MUFOLD / MUFOLD-CL – Solution for (Population-based)Protein 3D Structure Prediction

MUFOLD / MUFOLD-CL

:: DESCRIPTION

MUFOLD is comprehensive platform for efficient and consistently accurate protein tertiary structure prediction.

MUFOLD-CL is a fast algorithm for population-based protein structural model analysis.

::DEVELOPER

MUFOLD team

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux

:: DOWNLOAD

 MUFOLD-CL

:: MORE INFORMATION

Citation

Proteomics. 2013 Jan;13(2):221-9. doi: 10.1002/pmic.201200334. Epub 2013 Jan 3.
Fast algorithm for population-based protein structural model analysis.
Zhang J1, Xu D.

Zhang J, Wang Q, Barz B, He Z, Kosztin I, Shang Y, Xu D:
MUFOLD: A new solution for protein 3D structure prediction.
Proteins 2010, 78(5):1137-1152.

cbsPredict – Detect Potential Carbohydrate-binding Sites in Protein 3D Structures

cbsPredict

:: DESCRIPTION

Given a protein structure (PDB file), cbsPredict will identify potential carbohydrate-binding sites based on detection of coplanar, aromatic residues located on the protein surface.

::DEVELOPER

DoxeyLab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • WEb Server

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Doxey AC, Cheng Z, Moffatt BA, McConkey BJ. (2010)
Structural motif screening reveals a novel, conserved carbohydrate-binding surface in the pathogenesis-related protein PR-5d.
BMC Structural Biology, 10:23.