SLIM 1.1 – Sliding Linear Model for Estimating the Proportion of true null Hypotheses in Datasets

SLIM 1.1

:: DESCRIPTION

SLIM (Sliding Linear Model) is a software to more reliably estimate π(0) under dependence. When tested on a number of simulation datasets with varying data dependence structures and on microarray data, SLIM was found to be robust in estimating π(0) against dependence. The accuracy of its π(0) estimation suggests that SLIM can be used as a stand-alone tool for prediction of significant tests.

::DEVELOPER

 the Tsai lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows / MacOsX
:: DOWNLOAD

 SLIM

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Jan 15;27(2):225-31. Epub 2010 Nov 18.
SLIM: a sliding linear model for estimating the proportion of true null hypotheses in datasets with dependence structures.
Wang HQ, Tuominen LK, Tsai CJ.

frappe 1.1 – Estimating Individual Ancestry Proportion

frappe 1.1

:: DESCRIPTION

frappe is a program for estimating individual ancestry and admixture proportions using high-density SNP data.

:: DEVELOPER

Tang Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX / WIndows

:: DOWNLOAD

 frappe

:: MORE INFORMATION

Citation

Tang H, Peng J., Wang P., and Risch N. (2005)
Estimation of Individual Admixture:Analytical and Study Design Considerations.
Genet Epidemiol. 28:289-301.

DNA Counter 1.0.2 – Caculate Proportions of A,C G, T ,CG, AT in DNA Sequence

DNA Counter 1.0.2

:: DESCRIPTION

DNA   Counter is a freeware tool that shows the proportions of A,C G, T nucleotides and CG, AT nucleotides in a DNA sequence.

::DEVELOPER

Heracle BioSoft

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

DNA Counter

:: MORE INFORMATION

N/A