VisGrid – Identify Pockets in Protein Surfaces

VisGrid

:: DESCRIPTION

The VisGrid algorithm identifies geometric features of protein surfaces using an intuitive concept of the visibility.

::DEVELOPER

Kihara Bioinformatics Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 VisGrid

:: MORE INFORMATION

Citation

Characterization of local geometry of protein surfaces with the visibility criterion.
Li B, Turuvekere S, Agrawal M, La D, Ramani K, Kihara D.
Proteins. 2008 May 1;71(2):670-83.

MSPocket 1.1 – Detection and Graphical Analysis of Protein Surface Pockets

MSPocket 1.1

:: DESCRIPTION

MSPocket is an orientation independent program for the detection and graphical analysis of protein surface pockets.

::DEVELOPER

Zhu, Hongbo.

:: SCREENSHOTS

MSPocket

:: REQUIREMENTS

  • Linux / Windows /Mac OsX
  • Python
  • Biopython
  • MSMS
  • PyMOL

:: DOWNLOAD

 MSPocket

:: MORE INFORMATION

Citation

Zhu H, Pisabarro MT.
MSPocket: an orientation-independent algorithm for the detection of ligand binding pockets.
Bioinformatics. 2011 Feb 1;27(3):351-8.