sMotif / exMotif
:: DESCRIPTION
sMotif and exMotif are two complementary for searching and extracting/mining structured sequence motifs DNA sequences. A structured motif consists of simple motifs separated by different gap lengths. The simple motif may be a simple pattern or a position weighted matrix or profile. Given a template structured motif (pattern or profile), sMotif finds all matches in a given set of sequences. On the other hand, exMotif mines novel motifs matching some minimal conditions on the gaps and frequency.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
- Linux
- C++ Compiler
:: DOWNLOAD
:: MORE INFORMATION
Citation
Yongqiang Zhang and Mohammed J. Zaki,
EXMOTIF: efficient structured motif extraction.
Algorithms for molecular biology, 1(21). Nov 2006.
Yongqiang Zhang and Mohammed J. Zaki,
SMOTIF: efficient structured pattern and profile motif search.
Algorithms for molecular biology, 1(22). Nov 2006.