MDI-GPU 1.0.1 – Accelerating integrative modelling for Genomic-scale data using GP-GPU Computing

MDI-GPU 1.0.1

:: DESCRIPTION

MDI-GPU is an improved implementation of a Bayesian correlated clustering algorithm, that permits integrated clustering to be routinely performed across multiple datasets, each with tens of thousands of items.

::DEVELOPER

Warwick Systems Biology Centre

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 MDI-GPU

:: MORE INFORMATION

Citation

MDI-GPU: accelerating integrative modelling for genomic-scale data using GP-GPU computing.
Mason SA, Sayyid F, Kirk PD, Starr C, Wild DL.
Stat Appl Genet Mol Biol. 2016 Mar 1;15(1):83-6. doi: 10.1515/sagmb-2015-0055.

VisualTE 1.02 – Graphical Interface for Transposable Element Analysis at Genomic Scale

VisualTE 1.02

:: DESCRIPTION

VisualTE is a JAVA stand-alone graphical interface that allows users to visualize and analyze all occurrences of transposable element families in annotated genomes.

::DEVELOPER

Biophotonics Lab

:: SCREENSHOTS

VisualTE

:: REQUIREMENTS

  • Linux/ Windows / MacOsX
  • Java Runtime Environment (JRE)

:: DOWNLOAD

 VisualTE

:: MORE INFORMATION

Citation

VisualTE: a graphical interface for transposable element analysis at the genomic scale.
Tempel S, Talla E.
BMC Genomics. 2015 Feb 27;16:139. doi: 10.1186/s12864-015-1351-5.