bellmansgap 20150520 – Dynamic Programming for Bioinformatics

bellmansgap 20150520

:: DESCRIPTION

Bellman’s GAP is a new programming system, designed to ease the development of bioinformatics tools based on the dynamic programming technique.

::DEVELOPER

Stefan Janssen , Dr. Georg Sauthoff

:: SCREENSHOTS

N/a

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 bellmansgap

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Mar 1;29(5):551-60. doi: 10.1093/bioinformatics/btt022. Epub 2013 Jan 25.
Bellman’s GAP–a language and compiler for dynamic programming in sequence analysis.
Sauthoff G1, Möhl M, Janssen S, Giegerich R.

SAP 1.1.3 – Pairwise Protein Structure Alignment via double Dynamic Programming

SAP 1.1.3

:: DESCRIPTION

SAP is a software of pairwise protein structure alignment via double dynamic programming.

::DEVELOPER

Willie Taylor

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 SAP

:: MORE INFORMATION

Citation:

Taylor W.R.,
Protein structure comparison using SAP.
Methods Mol. Biol. 143 (2000) 19-32.

ColinearScan 1.01 – Dynamic Programming for Colinearity Analysis of Genomes

ColinearScan 1.01

:: DESCRIPTION

ColinearScan is a software of dynamic programming for colinearity analysis of genomes

::DEVELOPER

Center for Bioinformatics, PKU.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 ColinearScan

:: MORE INFORMATION

Citation:

Wang X, Shi X, Li Z, Zhu Q, Kong L, Tang W, Ge S, Luo J.
Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice.
BMC Bioinformatics. 2006 Oct 12;7:447.