COMPASS 2.0 – Protein Backbone Resonance Assignment

COMPASS 2.0

:: DESCRIPTION

COMPASS is used for protein backbone resonance assignment from unassigned triple resonance peak lists. Compared to most other software for the same purpose, COMPASS lets the user control the assignment process, enabling supreme accuracy. COMPASS is well suited for the assignment of larger deuterated proteins.

::DEVELOPER

Patrik Lundström

:: SCREENSHOTS

compass

:: REQUIREMENTS

  • Linux / Windows/ MacOsX

:: DOWNLOAD

 COMPASS

:: MORE INFORMATION

Citation

Fast and accurate resonance assignment of small-to-large proteins by combining automated and manual approaches.
Niklasson M, Ahlner A, Andresen C, Marsh JA, Lundström P.
PLoS Comput Biol. 2015 Jan 8;11(1):e1004022. doi: 10.1371/journal.pcbi.1004022.

COMPASS 1.0.1 – Generating Serial Samples under an Infinite Sites Model

COMPASS 1.0.1

:: DESCRIPTION

The program COMPASS (COalescence siMulation Program Allowing Serial Samples) generates serial samples collected at various points in time. The samples are generated using coalescence simulations permitting various demographic scenarios.

::DEVELOPER

Jakobsson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/ Windows

:: DOWNLOAD

  COMPASS

:: MORE INFORMATION

Citation

Mattias Jakobsson
COMPASS: a program for generating serial samples under an infinite sites model
Bioinformatics (2009) 25 (21): 2845-2847.

OMSSA 2.1.9 / COMPASS 1.4.1 – MS/MS Peptide Spectra Identification

OMSSA 2.1.9 / COMPASS 1.4.1

:: DESCRIPTION

OMSSA [ Open Mass Spectrometry Search Algorithm] is an efficient search engine for identifying MS/MS peptide spectra by searching libraries of known protein sequences. OMSSA scores significant hits with a probability score developed using classical hypothesis testing, the same statistical method used in BLAST.

COMPASS is the Coon OMSSA (Open Mass Spectrometry Search Algorithm) Proteomic Analysis Software Suite.

::DEVELOPER

National Center for Biotechnology Information / The Coon Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOS

:: DOWNLOAD

 OMSSA  / COMPASS

:: MORE INFORMATION

Citation:

Wenger CD, Phanstiel DH, Lee MV, Bailey DJ, Coon JJ.
COMPASS: A suite of pre- and post-search proteomics software tools for OMSSA,
Proteomics, 2011; 11(6): 1064–74

J Proteome Res. 2004 Sep-Oct;3(5):958-64.
Open mass spectrometry search algorithm.
Geer LY, Markey SP, Kowalak JA, Wagner L, Xu M, Maynard DM, Yang X, Shi W, Bryant SH.

COMPASS 3.1 – COmparison of Multiple Protein Sequence Alignments with assessment of Statistical Significance.

COMPASS 3.1

:: DESCRIPTION

COMPASS runs a search with submitted alignment (or sequence) as a query against a database of protein families.

::DEVELOPER

Grishin Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 COMPASS

:: MORE INFORMATION

Citation:

R.I. Sadreyev, M. Tang, B. Kim and N.V. Grishin (2009)
COMPASS server for homology detection: improved statistical accuracy, speed, and functionality.
Nucleic Acids Res doi:10.1093/nar/gkp360.