ConsensusFixer 0.4 – Consensus Sequence Caller with Ambiguous bases and in-frame Insertions

ConsensusFixer 0.4

:: DESCRIPTION

ConsensusFixer is a java command line application which computes a consensus sequence with in-frame insertions and ambiguous nucleotide (wobbles) from ultra deep next-generation sequencing alignments.

::DEVELOPER

Armin Töpfer

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX
  • Java

:: DOWNLOAD

 ConsensusFixer

:: MORE INFORMATION

Haplo Stats 1.6.11 – Statistical Methods for Haplotypes When Linkage Phase is Ambiguous

Haplo Stats 1.6.11

:: DESCRIPTION

Haplo Stats is a suite of R routines for the analysis of indirectly measured haplotypes. The statistical methods assume that all subjects are unrelated and that haplotypes are ambiguous (due to unknown linkage phase of the genetic markers), while also allowing for missing alleles.

::DEVELOPER

Division of Biomedical Statistics and Informatics,  Mayo Clinic

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Haplo Stats

:: MORE INFORMATION

Citation

Am J Hum Genet. 2002 Feb;70(2):425-34. Epub 2001 Dec 27.
Score tests for association between traits and haplotypes when linkage phase is ambiguous.
Schaid DJ1, Rowland CM, Tines DE, Jacobson RM, Poland GA.