SysCall 1.1 – Distinguishing Heterozygous sites from Systematic Errors

SysCall 1.1

:: DESCRIPTION

SysCall is a logistic regression based classifier. Given a list of candidate heterozygous genomic locations and a sam file of sequenced reads SysCall classifies each genomic location as either a heterozygous site or a systematic error and outputs according lists, along with the assigned posterior probabilities.

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::DEVELOPER

Pachter Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Mac OsX / Windows
  • perl

:: DOWNLOAD

 SysCall

:: MORE INFORMATION

Citation

F Meacham, D Boffelli, J Dhahbi, DI Martin, M Singer and L Pachter
Identification and correction of systematic error in high-throughput sequence data
BMC Bioinformatics 2011, 12:451 doi:10.1186/1471-2105-12-451

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