STRMS 0.5.2 – Structural RNA Motif Search

STRMS 0.5.2

:: DESCRIPTION

STRMS is a tool for structural RNA motif search. The tool takes as input the secondary structure of the query and a target sequence database, and reports all occurrences of the query in the target. The tool takes into account a sequence and structure options. The search is based on subtree homeomorphism for ordered, rooted trees (which we use to represent the RNA structures) .

Advertisement

::DEVELOPER

Michal Ziv-Ukelson’s Research Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 STRMS

:: MORE INFORMATION

Citation

Isana Veksler-Lublinsky, Michal Ziv-Ukelson, Danny Barash and Klara Kedem.
A Structure Based Flexible Search Method for ncRNA motifs.
Journal of Computational Biology 14(7): 908-926, 2007.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.