SCRMshaw is a genome-wide CRM prediction program that learns parameters from a list of CRMs that regulates the same spatial/temporal gene expression pattern, and predicts CRMs with similar functionality genome-wide. The SCRMshaw program is designed for predicting CRMs in the genome sequence of model/non-model species given the known CRMs provided by users. Users can also choose three different scoring schemes to predict CRMs: IMM, PAC and HexMCD.
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Dev Biol. 2016 Aug 15;416(2):402-13. doi: 10.1016/j.ydbio.2016.06.031.
Redeployment of a conserved gene regulatory network during Aedes aegypti development.
Suryamohan K, Hanson C, Andrews E, Sinha S, Scheel MD, Halfon MS.