REMOCOD is a program for the systematic identification of pairs of transcription factor binding sites (TFBSs) that tend to co-occur in promoter sequences of a set of co-regulated genes. Given a set of gene IDs, the program first detects over-represented TFBSs in the promoter sequences corresponding to these genes, and subsequently predicts regulatory motifs that show a tendency to co-occur with any of the over-represented TFBSs.
Systems Immunology Laboratory , Osaka University
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Vandenbon A, Kumagai Y, Akira S, Standley DM.
“A novel unbiased measure for motif co-occurrence predicts combinatorial regulation of transcription“,
BMC Genomics. 2012;13 Suppl 7:S11. doi: 10.1186/1471-2164-13-S7-S11