RecoverY is a tool for shortlisting enriched reads from a sequencing dataset, based on k-mer abundance. Specifically, it can be used for isolating Y-specific reads from a Y flow-sorted dataset.
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Bioinformatics, 34 (7), 1125-1131 2018 Apr 1
RecoverY : k-mer-based read classification for Y-chromosome-specific sequencing and assembly,
Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna Makova, Paul Medvedev