PSMILE is a parallel algorithm for the efficient extraction of binding-site consensus from genomic sequences.This algorithm, based on an existing approach,SMILE, extracts structured motifs, that consist of an ordered collection of p>=1 boxes with sizes and spacings between them specified by given parameters.
The PSMILE source for any of these implementations can be requested by e-mail.
:: MORE INFORMATION
A parallel algorithm for the extraction of structured motifs
Alexandra M. Carvalho, Ana T. Freitas, Arlindo L. Oliveira and Marie-France Sagot
Proceedings of the 19th ACM Symposium on Applied Computing (SAC’04), pages 147-153 ,Nicosia, Cyprus, 2004