MuSeqBox (Multi-query Sequence Blast Output Examination)is a program designed for multi-query sequence BLAST output examination. It examines the BLAST output, extracts the informative parameters of BLAST hits, and saves them in tabular form in either text or HTML format. The hit tables are optionally further analyzed with the program to produce subsets of BLAST hits according to user-specified criteria. In particular, BLASTX output may be further analyzed to indicate queries that might potentially be alternatively spliced transcripts (e.g., an extra large segment of insertion or deletion), full-length coding sequences, or contains repeat structures.
The Brendel Group @ Indiana University
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Xing, L. and Brendel, V. (2000)
MuSeqBox: a program for multi-query sequence BLAST output examination.
Bioinformatics 17, 744-745.