Maltcms 1.3.2 / Maui 1.2.1 – Modular Application Toolkit for Chromatography Mass-Spectrometry

Maltcms 1.3.2 / Maui 1.2.1


Maltcms (Modular Application Toolkit for Chromatography Mass-Spectrometry) is an application framework mainly suited for developers working in the domain of bioinformatics for metabolomics and proteomics. Its aim is to provide reusable, efficient datastructures, abstracting from the various low-level data-formats like netcdf (ANDIMS), mzXML, mzData and mzML and providing consistent access to data features like mass spectra, chromatograms and metadata. Furthermore, Maltcms provides a platform for the implementation and execution of processing pipelines. New and existing algorithms can be easily implemented or included and executed together with existing processing elements.


Maui (Maltcms User Interface) is an application for visualization, exploration and processing of raw data from GC/LC-MS and GCxGC-MS experiments.


Nils Hoffmann




  • Linux / Mac / Windows
  • Java


Maltcms , Maui



ChromA: Signal Based Retention Time Alignment for Chromatography-Mass Spectrometry Data
Nils Hoffmann; Jens Stoye
Bioinformatics 2009; doi: 10.1093/bioinformatics/btp343

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