lemon-tree 3.0.4 – Biological Module Network Inference

lemon-tree 3.0.4

:: DESCRIPTION

LemonTree (former LeMoNe) is an algorithm to infer a module network from biological data. It can integrate heterogeneous data types such as expression data, copy number, microRNA, epigenetic profiles.

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::DEVELOPER

lemon-tree team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Java

:: DOWNLOAD

 lemon-tree

:: MORE INFORMATION

Citation:

Integrative multi-omics module network inference with Lemon-Tree.
Bonnet E, Calzone L, Michoel T.
PLoS Comput Biol. 2015 Feb 13;11(2):e1003983. doi: 10.1371/journal.pcbi.1003983.

Transcription regulatory networks in Caenorhabditis elegans inferred through reverse-engineering of gene expression profiles constitute biological hypotheses for metazoan development.
Vermeirssen V, Joshi A, Michoel T, Bonnet E, Casneuf T, Van de Peer Y.
Mol Biosyst. 2009 Dec;5(12):1817-30. Epub 2009 Jul 17.

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