HapTree-X is a haplotype reconstruction tool tailored towards phasing experiments with RNA-seq reads (by itself or jointly with genome/exome sequencing reads).
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Res Comput Mol Biol, 9029, 28-29 2015
HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction From Transcriptome and Genome Sequencing Data
Emily Berger, Deniz Yorukoglu, Bonnie Berger