GMQ (Graph-based Model Quality assessment method) is a protein quality assessment program which employs conditional random field. The program gives a binary prediction that predicts a modeled residue has an error within a C-alpha distance cutoff or not.
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Sci Rep. 2017 Jan 11;7:40629. doi: 10.1038/srep40629.
Prediction of Local Quality of Protein Structure Models Considering Spatial Neighbors in Graphical Models.
Shin WH, Kang X, Zhang J, Kihara D.