GLASS (GLobal Alignment SyStem) is a tool for aligning pairs of homologous sequences. It is designed for aligning long, divergent sequences, that contain blocks of moderate to strong homology, such as orthologous/paralogous pairs of genes
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S. Batzoglou, L. Pachter, J.P. Mesirov, B. Berger, and E.S. Lander.
“Human and mouse Gene Structure: Comparative Analysis and Application to Exon Prediction.”
Genome Research, July 1, 2000.