The GeneAnnot system explores the many-to-many relationship between probe-sets and genes, by directly comparing the individual probe sequences with publicly available cDNAs and predicted genes from GenBank, RefSeq and Ensembl. The transcript sequences are further identified as GeneCards genes using the GeneLoc system which merges LocusLink and Ensembl gene indices on the basis of their genomic position.
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BMC Bioinformatics. 2007 Nov 15;8:446.
Novel definition files for human GeneChips based on GeneAnnot.
Ferrari F1, Bortoluzzi S, Coppe A, Sirota A, Safran M, Shmoish M, Ferrari S, Lancet D, Danieli GA, Bicciato S.
Bioinformatics. 2004 Jun 12;20(9):1457-8. Epub 2004 Feb 12.
GeneAnnot: comprehensive two-way linking between oligonucleotide array probesets and GeneCards genes.
Chalifa-Caspi V, Yanai I, Ophir R, Rosen N, Shmoish M, Benjamin-Rodrig H, Shklar M, Stein TI, Shmueli O, Safran M, Lancet D.