ChromSDE 2.2 – Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data

ChromSDE 2.2

:: DESCRIPTION

ChromSDE is a deterministic method , which applies semi-definite programming techniques to find the best structure fitting the observed data and uses golden section search to find the correct parameter for converting the contact frequency to spatial distance.

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::DEVELOPER

Sung Wing Kin, Ken

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • MatLab

:: DOWNLOAD

ChromSDE

:: MORE INFORMATION

Citation

J Comput Biol. 2013 Nov;20(11):831-46. doi: 10.1089/cmb.2013.0076.
3D chromosome modeling with semi-definite programming and Hi-C data.
Zhang Z, Li G, Toh KC, Sung WK.

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