ABySS-Explorer 1.3.4 – Sequence Assembly Visualization Tool

ABySS-Explorer 1.3.4

:: DESCRIPTION

ABySS-Explorer is an interactive Java application that employs a novel graph-based representation to display a sequence assembly and associated meta data. The tool was designed with the ABySS sequence assembler in mind and was motivated by the need to examine assembly structure, in particular contig connectivity and supporting paired-end read relationships.

Advertisement

::DEVELOPER

Cydney Nielsen

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Java

:: DOWNLOAD

 ABySS-Explorer 

:: MORE INFORMATION

Citation

Nielsen CB, Jackman SD, Birol I, Jones SJM.
ABySS-Explorer: Visualizing genome sequence assemblies.
IEEE Transactions on Visualization and Computer Graphics (Proceedings Visualization / Information Visualization 2009). 2009. 15(6):881-8.

Leave a Reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.