zqFold is a simple software for predicting RNA secondary structure. The most development from RNAstructure is that it can predict based on species. For example, if you choose ‘tRNA’, and the sequence will be folded as a cloverleaf; if you choose ‘siRNA’ or ‘microRNA precursor’, it will be folded as a hairpin.
- Linux / Windows
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Quan Zou, Tuo Zhao, Yang Liu, Maozu Guo.
Predicting RNA secondary structure based on the class information and Hopfield network.
Computers in Biology and Medicine. 2009,39(3):206-214