Dec 302013
 

YMF 3.0 /FindExplanators 1.1.3

:: DESCRIPTION

YMF identifies motifs (made of IUPAC symbols) that occur unusually often in a given set of sequences.

FindExplanators extracts from that set of motifs a smaller set of independent motifs.

YMF Web version

::DEVELOPER

The Sinha Lab, Mathieu Blanchette and Martin Tompa , The Computational & Synthetic Biology group

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

YMF/FindExplanators

:: MORE INFORMATION

Citation

  • M. Blanchette, S. Sinha, “Separating real motifs from their artifacts”,Bioinformatics, vol. 17 Suppl 1 (2001) S30-8. Pubmed 11472990.
  • S. Sinha, M. Tompa, “A statistical method for finding transcription factor binding sites”, Proc Int Conf Intell Syst Mol Biol, vol. 8 (2000) 344-54.Pubmed 10977095.
  • S. Sinha, M. Tompa, “Discovery of novel transcription factor binding sites by statistical overrepresentation”, Nucleic Acids Res., vol. 30 (2002) 5549-60.Pubmed 12490723.
  • S. Sinha, M. Tompa, “YMF: A program for discovery of novel transcription factor binding sites by statistical overrepresentation”, Nucleic Acids Res.,vol. 31 (2003) 3586-8. Pubmed 12824371.

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