Dec 022014
 

YAKUSA

:: DESCRIPTION

YAKUSA (Yet Another K-Uples Structure Analyser) is a program devised to rapidly scan a structural database with a query protein structure. It searches for the longest common substructures, called SHSP for “structural high scoring pairs”, between a query structure and every structure in the structural database. It makes use of protein backbone internal coordinates (α angles) in order to describe protein structures as sequences of symbols. It uses a deterministic finite automaton for pattern matching.

::DEVELOPER

Mathilde Carpentier (mathilde,jompo@abi.snv.jussieu.fr), Sophie Brouillet, Joel Pothier

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • MacOsx/Linux

:: DOWNLOAD

 YAKUSA

:: MORE INFORMATION

Citation

Proteins. 2005 Oct 1;61(1):137-51.
YAKUSA: a fast structural database scanning method.
Carpentier M, Brouillet S, Pothier J.

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