XomAnnotate is a meta-analysis and functional-analysis pipeline for heterogeneous and complex exome. It combines GATK UnifiedGenotyper, Freebayes, Delly, and Lumpy algorithms that were designed for whole-genome and combines their strengths for exome data through meta-analysis to identify comprehensive mutation profile (SNPs, short inserts/deletes, and structural variations) of patients.
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XomAnnotate: Analysis of Heterogeneous and Complex Exome- A Step towards Translational Medicine.
Talukder AK, Ravishankar S, Sasmal K, Gandham S, Prabhukumar J, Achutharao PH, Barh D, Blasi F.
PLoS One. 2015 Apr 23;10(4):e0123569. doi: 10.1371/journal.pone.0123569.