xalign is a tool for multiple sequence alignment based on sequence homology and secondary structure. The user has the ability to include specific insights or knowledge into the alignment through sequence anchoring, clustering, changing the amino acid similarity matrix, gapping penalties, or even the order in which the sequences are aligned.
- Linux / MacOsX
:: MORE INFORMATION
David Wishart, Robert Boyko, Tim Jellard, Brian Sykes
Constrained multiple sequence alignment using XALIGN
Cabios Vol. 10 no.6 1994 Pages 687-688