WebPartiGene is a tool that generates HTML, php and CGI scripts that together form a web based interface to PartiGene relational databases. WebPartiGene allows specific clusters to be retrieved from the PartiGene database by entering either a cluster identifier or an EST idenitifier. The BLAST annotation text can also be searched and limited by BLAST score. Selected clusters are displayed in graphical format, showing the alignment of constituent sequences. The display includes links to full BLAST reports, phrap assembly quality files and public depository database files. WebPartiGene is full compatible with mulit-species PartiGene databases.
The Blaxter Lab at The Institute of Evolutionary Biology University of Edinburgh
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