WordSpy 1.5 – Identify Transcription Factor Binding Motifs by building a dictionary and learning a grammar

WordSpy 1.5

:: DESCRIPTION

WordSpy is a novel, steganalysis-based approach for genome-wide motif finding. The software views regulatory regions as a stegoscript with cis-elements embedded in ‘background’ sequences. WordSpy can discover a complete set of cis-elements and facilitate the systematic study of regulatory networks.

::DEVELOPER

Computational Intelligence Center(CIC)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX / Windows
  • Perl 

:: DOWNLOAD

  WordSpy

:: MORE INFORMATION

Citation:

Guandong Wang and Weixiong Zhang
A steganalysis-based approach for genome-wide identification of regulatory DNA sequence elements
Genome Biology 2006, 7:R49

 

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