WordSpy is a novel, steganalysis-based approach for genome-wide motif finding. The software views regulatory regions as a stegoscript with cis-elements embedded in ‘background’ sequences. WordSpy can discover a complete set of cis-elements and facilitate the systematic study of regulatory networks.
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Guandong Wang and Weixiong Zhang
A steganalysis-based approach for genome-wide identification of regulatory DNA sequence elements
Genome Biology 2006, 7:R49