Weeder 2.0 / WeederH 1.0 – Motif Discovery in Sequences from Coregulated Genes of a Single Species

Weeder 2.0 / WeederH 1.0

:: DESCRIPTION

Weeder is an algorithm for the automatic discovery of conserved motifs in a set of related regulatory DNA sequences.

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WeederH is a software for finding of conserved nucleotide motifs and regions through comparative genomics, tailored for the analysis of non-coding DNA and the identification of conserved TFBSs or whole enhancers or silencers.

::DEVELOPER

the Research Network of Bioinformatics and Comparative Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows

:: DOWNLOAD

 Weeder / WeederH

:: MORE INFORMATION

Citation:

Pavesi, G., Mereghetti, P., Mauri, G. and Pesole, G. (2004)
Weeder Web: discovery of transcription factor binding sites in a set of sequences from co-regulated genes.
Nucleic Acids Res., 32, W199-203.

WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences.
Pavesi G, Zambelli F, Pesole G.
BMC Bioinformatics. 2007 Feb 7;8:46.

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