May 202016
 

wavClusteR 2.7.2

:: DESCRIPTION

wavClusteR provides functions for the analysis of Next-Generation Sequencing data obtained from substitution inducing experimental procedures (e.g. PAR-CLIP, BisSeq). The implemented workflow consists of a two-component mixture model, identifying experimentally affected substitution frequencies, and a wavelet-based peak calling procedure.

::DEVELOPER

the Epigenomics Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • R package

:: DOWNLOAD

 wavClusteR

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2015 Feb 1;16(1):32.
Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data.
Comoglio F, Sievers C, Paro R.

Nucleic Acids Res. 2012 Nov 1;40(20):e160. doi: 10.1093/nar/gks697. Epub 2012 Jul 28.
Mixture models and wavelet transforms reveal high confidence RNA-protein interaction sites in MOV10 PAR-CLIP data.
Sievers C, Schlumpf T, Sawarkar R, Comoglio F, Paro R.

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