WaRSwap (Weighted and Reverse Swap sampling) is a network randomization method that for the first time provides a practical algorithm for network motif discovery in large multi-layer networks that include Transcription Factors (TFs), microRNAs (miRNAs), and non-TF protein coding genes.
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Genome Biol. 2013 Aug 23;14(8):R85.
Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits.
Megraw M1, Mukherjee S, Ohler U.