May 072014
 

VitaPred

:: DESCRIPTION

VitaPred is a SVM (Support Vector Machines) based prediction method for the vitamin-interacting residues in protein sequences. Vitamins play vital role in the cell and involves in the various enzymatic reaction and functions as a cofactor. VitaPred predicts that which amino acid residues in the protein sequence will interact with the vitamins. An example of protein-vitamin binding given in the following diagram, where pyridoxal 5′-phosphate (PLP, red color) interacts with specific residues (yellow color) of a protein (cyan color).

VitaPred Online version

::DEVELOPER

VitaPred Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

  VitaPred

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2013 Feb 7;14:44. doi: 10.1186/1471-2105-14-44.
Prediction of vitamin interacting residues in a vitamin binding protein using evolutionary information.
Panwar B1, Gupta S, Raghava GP.

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