VisRD is a software package allowing graphical inspection of the phylogenetic content of a sequence alignment, that is primarily intended for detection of recombination and recombination breakpoints.
The UEA Computational Biology Laboratory at the University of East Anglia (UEA)
- Linux/ Windows/MacOsX
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P. Lemey, M. Lott, D. P. Martin and V. Moulton,
Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning,
BMC bioinformatics (2009), 126-144