Dec 062013
 

ViSNE / CYT

:: DESCRIPTION

viSNE is a tool that allows one to map high-dimensional cytometry data onto two dimensions, yet conserve the high-dimensional structure of the data. viSNE plots individual cells in a visual similar to a scatter plot, while using all pairwise distances in high dimension to determine each cell’s location in the plot.

CYT is an interactive visualization tool designed for the analysis of viSNE maps and the high-dimensional mass or flow cytometry data from which these maps were projected.

::DEVELOPER

Dana Pe’er Lab

:: SCREENSHOTS

CYT

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Matlab
  • Java

:: DOWNLOAD

 ViSNE / CYT

:: MORE INFORMATION

Citation

Nat Biotechnol. 2013 Jun;31(6):545-52. doi: 10.1038/nbt.2594.
viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia.
Amir el-AD, Davis KL, Tadmor MD, Simonds EF, Levine JH, Bendall SC, Shenfeld DK, Krishnaswamy S, Nolan GP, Pe’er D.

550 views

Sorry, the comment form is closed at this time.