VCAKE (Verified Consensus Assembly by K-mer Extension) is a genetic sequence assembler capable of assembling millions of small nucleotide reads even in the presence of sequencing error. This software is currently geared towards de novo assembly of Illumina’s Solexa Sequencing data.
- Linux / Mac OsX / Windows
- C Compiler
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William R. Jeck et al.
Extending assembly of short DNA sequences to handle error
Bioinformatics (2007) 23 (21): 2942-2944.