VARiD (Variation Detection) is a Hidden Markov Model for SNP and indel identification with AB-SOLiD color-space as well as regular letter-space reads. VARiD combines both types of data in a single framework which allows for accurate predictions.
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Adrian V. Dalca; Stephen M. Rumble; Samuel Levy; Michael Brudno.
VARiD: A variation detection framework for color-space and letter-space platforms.
Bioinformatics 2010 26: i343-i349.