Sep 192015
 

UProC 1.2.0

:: DESCRIPTION

The UProC (ultrafast protein classification) toolbox implements a novel algorithm (“Mosaic Matching”) for large-scale sequence analysis and is now available in terms of an open source C library. UProC is up to three orders of magnitude faster than profile-based methods and achieved up to 80% higher sensitivity on unassembled short reads (100 bp) from simulated metagenomes. UProC does not depend on a multiple alignment of family-specific sequences. Therefore, in addition to the protein domain classfication according to the Pfam database, UProC can, in principle, also provide the detection of KEGG Orthologs

::DEVELOPER

Dr. Peter Meinicke

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • C++ Compiler

:: DOWNLOAD

 UProC

:: MORE INFORMATION

Citation

Bioinformatics. 2014 Dec 23. pii: btu843.
UProC: tools for ultra-fast protein domain classification.
Meinicke P

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