May 222014
 

UnMeRFi

:: DESCRIPTION

UnMeRFi (Under-Methylated Region Finder) estimates under-methylated regions in an unspecified DNA sequence. The program works by using a moving window (the size of which can be specified by the user) and by assessing the likelihood of that window to be under-methylated. As a final step windows passing the threshold  are joined to form contiguous under-methylated regions.

::DEVELOPER

Yakhini Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Java

:: DOWNLOAD

 UnMeRFi

:: MORE INFORMATION

Citation

Straussman et al
Developmental programming of CpG island methylation profiles in the human genome
Nature Structural & Molecular Biology 16, 564 – 571 (2009)

208 views

Sorry, the comment form is closed at this time.