tYNA (TopNet-like Yale Network Analyzer), a Web system for managing, comparing and mining multiple networks, both directed and undirected. tYNA efficiently implements methods that have proven useful in network analysis, including identifying defective cliques, finding small network motifs (such as feed-forward loops), calculating global statistics (such as the clustering coefficient and eccentricity), and identifying hubs and bottlenecks etc.
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The tYNA platform for comparative interactomics: a web tool for managing, comparing and mining multiple networks.
Yip KY, Yu H, Kim PM, Schultz M, Gerstein M.
Bioinformatics. 2006 Dec 1;22(23):2968-70.