Twinscan/N-SCAN is a suite of software for gene-structure prediction. Twinscan is currently available for Mammals, Caenorhabditis (worm), Dicot plants, and Cryptococci. N-SCAN is available for human and Drosophila (fruitfly).
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Flicek P, Keibler E, Hu P, Korf I, Brent MR.
Leveraging the mouse genome for gene prediction in human: from whole-genome shotgun reads to a global synteny map.
Genome Res. 2003 Jan;13(1):46-54.