Nov 182014
 

trieFinder

:: DESCRIPTION

The trieFinder program is designed to rapidly map Digital Gene Expression (DGE) tags of various lengths to RefSeq, UniGene, and/or genomic sequences. It annotates the tags with information from the sequence files, providing output in a format that is amenable to both transcript quantification and the detection of novel transcripts.

::DEVELOPER

trieFinder team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler
  • Perl

:: DOWNLOAD

  trieFinder

:: MORE INFORMATION

Citation

BMC Bioinformatics. 2014 Oct 13;15:329. doi: 10.1186/1471-2105-15-329.
trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags.
Renaud G, LaFave MC, Liang J, Wolfsberg TG, Burgess SM

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