May 292013
 

TreQ 0.1 beta

:: DESCRIPTION

TreQ is a read mapper for high-throughput DNA sequencing reads, in particular reads from 100 nt to hundreds of nucleotides, and for large edit distance between sequencing read and match in the reference genome.

::DEVELOPER

Schliep lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • GCC

:: DOWNLOAD

 TreQ

:: MORE INFORMATION

Citation

Bioinformatics. 2012 Sep 15;28(18):i325-i332. doi: 10.1093/bioinformatics/bts380.
Indel-tolerant read mapping with trinucleotide frequencies using cache-oblivious kd-trees.
Mahmud MP, Wiedenhoeft J, Schliep A.

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