Dec 072012
 

Trellis / Trellis+

:: DESCRIPTION

Trellis is a disk-based suffix tree indexing methods (with suffix links) that is capable of indexing the entire human genome on a commodity PC with limited memory.

Trellis+ extends Trellis by further removing some memory limitations by using a novel guide suffix tree in memory.

::DEVELOPER

Mohammed J. Zaki

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ Compiler

:: DOWNLOAD

  Trellis / Trellis+

:: MORE INFORMATION

Citation

Benjarath Phoophakdee and Mohammed J. Zaki,
Genome-scale Disk-based Suffix Tree Indexing.
In ACM SIGMOD International Conference on Management of Data. Jun 2007.

Benjarath Phoophakdee and Mohammed J. Zaki,
TRELLIS+: An Effective Approach for Indexing Genome-Scale Sequences using Suffix Trees.
In 13th Pacific Symposium on Biocomputing. Jan 2008

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