Dec 182014
 

TreeFix 1.1.10 / TreeFix-DTL 1.0.2

:: DESCRIPTION

TreeFix is a phylogenetic method for improving gene tree reconstructions using a test statistic for likelihood equivalence and a species tree aware (reconciliation) cost function.

TreeFix-DTL is a phylogenetic program for reconstructing highly accurate prokaryotic gene trees.

::DEVELOPER

Yi-Chieh Wu @ MIT Computational Biology Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python
  • C Compiler

:: DOWNLOAD

  TreeFix / TreeFix-DTL

:: MORE INFORMATION

Citation

TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees
Yi-Chieh Wu, Matthew D. Rasmussen, Mukul S. Bansal, and Manolis Kellis.
Systematic Biology. 2013. doi: 10.1093/sysbio/sys076

Improved Gene Tree Error-Correction in the Presence of Horizontal Gene Transfer.
Bansal MS, Wu YC, Alm EJ, Kellis M.
Bioinformatics. 2014 Dec 5. pii: btu806.

146 views

Sorry, the comment form is closed at this time.