TRANSPO searchs transposons of Class II which are characterized by the existence of terminal inverted repeats, denoted TIR’s, that flank the transposons. Then, given the TIR, the program finds all locations at which the direct and inverse TIR approximate matches the DNA sequence and whose distance lies within a given range. Finally TRANSPO returns the following five sequences: Left Target – Left Tir – transposon – Right TIR – Right Target
N. Santiago and Dr. J.M. Casacuberta of the CID (CSIC) and C. Herraiz, R. Goñi and Dr. X. Messeguer of the LSI (UPC).
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