TransModis – Sequence Motif and Gene Expression or ChIP-binding data to Identify TF Binding Sites

TransModis

:: DESCRIPTION

TransModis is a generalization of MODEM to consider sequence motif and multiple gene expression or ChIP-binding experiments to identify TF binding sites.

::DEVELOPER

Wei Wang’s group

:: SCREENSHOTS

N/A

::REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 TransModis

:: MORE INFORMATION

Citation

Yu RX, Liu J, True N, Wang W (2008)
Identification of Direct Target Genes Using Joint Sequence and Expression Likelihood with Application to DAF-16.
PLoS ONE 3(3): e1821. doi:10.1371/journal.pone.0001821